Key Lime Cupcakes with Graham Cracker Crust

Get ready to fall in love with these incredible Key Lime Cupcakes. Imagine a buttery graham cracker crust, a ridiculously moist and tender cupcake, and a silky cream cheese frosting, all bursting with the zesty, tangy flavor of real key limes. This recipe is your ticket to a tropical dessert paradise, perfect for parties, celebrations, or simply satisfying a sweet craving. We’ve designed this guide to be foolproof, ensuring you get perfect results every single time.

Whether you’re an experienced baker or just starting, these cupcakes are surprisingly simple to make. We’ll walk you through every step, from creating the perfect crust to whipping up a frosting that’s both stable and delicious. This is more than just a recipe; it’s a complete guide to mastering the art of the perfect key lime dessert.

Why You’ll Love This Key Lime Cupcakes Recipe


This isn’t just another cupcake recipe. Here’s why it stands out as the absolute best:

  • Perfect Texture Trio: You get a crisp, buttery graham cracker crust, a soft and moist cupcake crumb, and a lusciously smooth cream cheese frosting in every single bite.
  • Authentic Tangy Flavor: We use real key lime juice and zest for that signature tart flavor that is perfectly balanced by the sweetness of the cake and frosting.
  • Visually Stunning: These cupcakes look as good as they taste! They are a beautiful centerpiece for any dessert table, and they’re surprisingly easy to decorate.
  • Easy to Follow: The instructions are broken down into simple, manageable steps, with pro tips along the way to guarantee your success.

Ingredients You’ll Need

For the best results, we recommend gathering all your ingredients before you begin. Using room temperature ingredients for the cake and frosting is crucial for a smooth, well-incorporated batter.

For the Graham Cracker Crust

  • Graham Cracker Crumbs: Provides the classic sandy, sweet base.
  • Granulated Sugar: Adds a touch of sweetness and helps the crust bind.
  • Unsalted Butter: Melted butter is the glue that holds the crust together.

For the Key Lime Cupcakes

  • All-Purpose Flour: The structural foundation of our cupcakes.
  • Baking Powder & Baking Soda: Leavening agents that create a light, fluffy texture.
  • Salt: Balances the sweetness and enhances all the other flavors.
  • Unsalted Butter: Make sure it’s at room temperature for a smooth batter.
  • Granulated Sugar: For sweetness and a tender crumb.
  • Eggs: Room temperature eggs incorporate better and create more volume.
  • Key Lime Juice & Zest: The star of the show! Fresh is always best.
  • Vanilla Extract: Complements the lime and adds depth of flavor.
  • Buttermilk: Room temperature buttermilk adds moisture and a slight tang that works beautifully with the lime.

For the Cream Cheese Frosting

  • Cream Cheese: Use full-fat, block-style cream cheese, softened to room temperature.
  • Unsalted Butter: Softened to room temperature for a silky smooth texture.
  • Powdered Sugar: Sift it to avoid any lumps in your frosting.
  • Key Lime Juice & Zest: Adds that signature tangy flavor to the frosting.
  • Vanilla Extract: A splash to round out the flavors.
A key lime cupcake being frosted with silky cream cheese frosting piped from a piping bag. The image showcases the process of making homemade key lime cupcakes.
The finishing touch: a generous swirl of tangy and sweet cream cheese frosting.

Step-by-Step Instructions

Follow these steps carefully for cupcake perfection. We’ll start with the crust, move to the cupcakes, and finish with that glorious frosting.

Step 1: Make the Graham Cracker Crust

  1. Preheat your oven to 350°F (175°C) and line a 12-cup muffin tin with paper liners.
  2. In a small bowl, mix the graham cracker crumbs and sugar. Pour in the melted butter and stir with a fork until all the crumbs are evenly moistened.
  3. Press approximately 1 tablespoon of the mixture into the bottom of each cupcake liner. Use the bottom of a small glass or a spice jar to pack it down firmly.
  4. Bake for 5 minutes to set the crust. Remove from the oven and let it cool completely.

Step 2: Prepare the Cupcake Batter

  1. In a medium bowl, whisk together the all-purpose flour, baking powder, baking soda, and salt. Set aside.
  2. In a large bowl, using a hand mixer or stand mixer, beat the room temperature butter and granulated sugar on medium-high speed until light and fluffy, about 3-4 minutes.
  3. Add the eggs one at a time, beating well after each addition. Scrape down the sides of the bowl as needed. Mix in the key lime juice, zest, and vanilla extract.
  4. Reduce the mixer speed to low and add the dry ingredients in three additions, alternating with the buttermilk in two additions (beginning and ending with the dry ingredients). Mix only until just combined—do not overmix!

Step 3: Bake the Cupcakes

  1. Fill each cupcake liner about two-thirds full with the batter, right on top of the cooled crust.
  2. Bake for 18-22 minutes, or until a wooden skewer inserted into the center comes out clean.
  3. Let the cupcakes cool in the pan for 5 minutes before transferring them to a wire rack to cool completely. Cupcakes must be 100% cool before frosting.
An extreme close-up of a key lime cupcake, showing the moist cake crumb, a layer of graham cracker crust, and a perfect swirl of cream cheese frosting with lime zest.
Look at that perfect texture! A moist crumb and buttery graham cracker crust in every bite.

Step 4: Make the Cream Cheese Frosting

  1. In a large bowl, beat the softened cream cheese and butter with an electric mixer on medium-high speed until completely smooth and creamy.
  2. Reduce the speed to low and gradually add the sifted powdered sugar until it’s all incorporated.
  3. Add the key lime juice, zest, and vanilla extract. Increase the mixer speed to high and beat for 2-3 minutes until the frosting is light, fluffy, and smooth.

Step 5: Assemble Your Cupcakes

  1. Once the cupcakes are completely cool, transfer the frosting to a piping bag fitted with your favorite tip (like a Wilton 1M).
  2. Pipe a generous swirl of frosting onto each cupcake.
  3. Garnish with extra key lime zest, a small lime wedge, or a sprinkle of graham cracker crumbs.

Pro Tips for Perfect Key Lime Cupcakes

These tips will take your cupcakes from good to unforgettable.

Key Limes vs. Persian Limes

Key limes are smaller, more acidic, and have a more intense aroma than the standard Persian limes you see at the store. If you can find them, use them! If not, regular Persian limes will still make a delicious cupcake. You can often find bottled key lime juice, which is a great convenience. For more great ideas check out these other healthy baking recipes.

Room Temperature Ingredients are Key

I can’t stress this enough. Using room temperature butter, eggs, cream cheese, and buttermilk is crucial. It allows the ingredients to emulsify, creating a uniform batter that traps air and results in a light, fluffy cupcake crumb.

Don’t Overmix the Batter

Once you add the flour, mix on the lowest speed and only until the streaks of flour disappear. Overmixing develops gluten, which can lead to tough, dense cupcakes. Looking for another fruity dessert? Try these amazing lemon raspberry bars.

How to Tell When Cupcakes Are Done

The best way to check for doneness is with a toothpick or wooden skewer. Insert it into the center of a cupcake—if it comes out clean or with a few moist crumbs attached, they’re ready. If you see wet batter, they need more time.

Recipe Variations

Feel free to get creative with this base recipe!

  • Toasted Coconut: Sprinkle toasted sweetened coconut on top of the frosting for a delicious piña colada vibe.
  • Meringue Topping: Instead of cream cheese frosting, top your cupcakes with a fluffy toasted meringue for a key lime pie feel.
  • Lemon Twist: Swap the key limes for lemons for a different citrusy treat. Our strawberry lemonade cupcakes are another fan favorite.

Storage Instructions

Because of the cream cheese frosting, these Key Lime Cupcakes must be stored in the refrigerator. Place them in an airtight container and they will stay fresh for up to 4 days. For the best taste and texture, let them sit at room temperature for about 20-30 minutes before serving to allow the cake and frosting to soften slightly.

FAQs about Key Lime Cupcakes

Yes, you can. If you can’t find key limes or bottled key lime juice, regular (Persian) limes will work. The flavor will be slightly less tart and intense, but still absolutely delicious.


Absolutely. You can bake the cupcakes (without frosting) one day in advance and store them in an airtight container at room temperature. The frosting can also be made ahead and stored in the fridge for up to 3 days. Let it soften at room temperature before whipping it again for a minute to restore its fluffy texture, then frost the cupcakes before serving.


The secret is to pre-bake the crust for 5 minutes before adding the cupcake batter. This helps set the crust and creates a slight barrier, keeping it crispier.


This can happen if your cream cheese or butter is too soft, or if you use cream cheese from a tub instead of the block variety. To fix it, try chilling the frosting in the refrigerator for 20-30 minutes. You can also add more sifted powdered sugar, a tablespoon at a time, until it reaches the desired consistency.


Because of the cream cheese frosting, the cupcakes must be refrigerated. Store them in an airtight container in the fridge for up to 4 days. For the best taste, let them sit at room temperature for about 20 minutes before enjoying.


The Ultimate Recipe for Key Lime Cupcakes

An extreme close-up of a key lime cupcake, showing the moist cake crumb, a layer of graham cracker crust, and a perfect swirl of cream cheese frosting with lime zest.
FL Recipes

Key Lime Cupcakes with Graham Cracker Crust

The ultimate Key Lime Cupcakes recipe! Features a buttery graham cracker crust, a moist cupcake, and a tangy cream cheese frosting. This foolproof guide delivers a perfect balance of sweet and tart for an unforgettable tropical dessert.
Prep Time 25 minutes
Cook Time 22 minutes
Total Time 47 minutes
Servings: 12 cupcakes
Course: Dessert
Cuisine: American
Calories: 410

Ingredients
  

For the Graham Cracker Crust
  • 1 cup graham cracker crumbs from about 7 full sheets
  • 2 tbsp granulated sugar
  • 4 tbsp unsalted butter melted
For the Key Lime Cupcakes
  • 1 1/2 cups all-purpose flour
  • 1 1/2 tsp baking powder
  • 1/4 tsp baking soda
  • 1/4 tsp salt
  • 1/2 cup unsalted butter softened to room temperature
  • 1 cup granulated sugar
  • 2 large eggs room temperature
  • 1/2 cup key lime juice fresh or bottled
  • 1 tbsp key lime zest
  • 1 tsp vanilla extract
  • 1/2 cup buttermilk room temperature
For the Cream Cheese Frosting
  • 8 oz cream cheese full-fat, block style, softened
  • 1/2 cup unsalted butter softened
  • 3-4 cups powdered sugar sifted
  • 2 tbsp key lime juice
  • 1 tsp key lime zest
  • 1 tsp vanilla extract

Equipment

  • 1 12-cup muffin tin
  • 1 Electric Mixer (Hand or Stand)
  • 1 Piping bag and tip Optional, for decorating

Method
 

Step 1: Make the Graham Cracker Crust
  1. Preheat your oven to 350°F (175°C) and line a 12-cup muffin tin with paper liners.
  2. In a small bowl, mix the graham cracker crumbs and sugar. Pour in the melted butter and stir with a fork until all the crumbs are evenly moistened.
  3. Press approximately 1 tablespoon of the mixture into the bottom of each cupcake liner. Use the bottom of a small glass or a spice jar to pack it down firmly.
  4. Bake for 5 minutes to set the crust. Remove from the oven and let it cool completely.
Step 2: Prepare the Cupcake Batter
  1. In a medium bowl, whisk together the all-purpose flour, baking powder, baking soda, and salt. Set aside.
  2. In a large bowl, using a hand mixer or stand mixer, beat the room temperature butter and granulated sugar on medium-high speed until light and fluffy, about 3-4 minutes.
  3. Add the eggs one at a time, beating well after each addition. Scrape down the sides of the bowl as needed. Mix in the key lime juice, zest, and vanilla extract.
  4. Reduce the mixer speed to low and add the dry ingredients in three additions, alternating with the buttermilk in two additions (beginning and ending with the dry ingredients). Mix only until just combined—do not overmix!
Step 3: Bake the Cupcakes
  1. Fill each cupcake liner about two-thirds full with the batter, right on top of the cooled crust.
  2. Bake for 18-22 minutes, or until a wooden skewer inserted into the center comes out clean.
  3. Let the cupcakes cool in the pan for 5 minutes before transferring them to a wire rack to cool completely. Cupcakes must be 100% cool before frosting.
Step 4: Make the Cream Cheese Frosting
  1. In a large bowl, beat the softened cream cheese and butter with an electric mixer on medium-high speed until completely smooth and creamy.
  2. Reduce the speed to low and gradually add the sifted powdered sugar until it's all incorporated.
  3. Add the key lime juice, zest, and vanilla extract. Increase the mixer speed to high and beat for 2-3 minutes until the frosting is light, fluffy, and smooth.
Step 5: Assemble Your Cupcakes
  1. Once the cupcakes are completely cool, transfer the frosting to a piping bag fitted with your favorite tip (like a Wilton 1M).
  2. Pipe a generous swirl of frosting onto each cupcake.
  3. Garnish with extra key lime zest, a small lime wedge, or a sprinkle of graham cracker crumbs.

Nutrition

Calories: 410kcalProtein: 4gFat: 22gFiber: 1g

Notes

For the best flavor, use fresh key lime juice, but bottled key lime juice works well as a substitute.
Ensure all your dairy ingredients (butter, eggs, buttermilk, cream cheese) are at room temperature for the smoothest batter and frosting.
Do not overmix the cupcake batter after adding the flour, as this can result in tough cupcakes.
Keyword cupcake recipe,graham cracker crust,key lime cupcakes

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We are so excited for you to try this recipe! There’s nothing better than these bright, zesty Key Lime Cupcakes to bring a little sunshine to your day. If you make them, please leave a comment below and let us know how they turned out. Don’t forget to share a photo of your beautiful cupcakes on Pinterest!

A beautiful arrangement of key lime cupcakes with swirls of cream cheese frosting, topped with lime zest and a lime slice. The perfect easy key lime cupcakes recipe for any occasion.
The best Key Lime Cupcakes with a crisp graham cracker crust and tangy cream cheese frosting!

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