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Why You’ll Absolutely Love This Panera Pumpkin Muffin Recipe
Oh, friends, let me tell you about these pumpkin muffins! Baking has always been my happy place, especially when the seasons start to change and that crisp autumn air rolls in. I remember vividly, as a kid, the first day my grandma would bake her pumpkin muffins. The entire house would fill with this incredible aroma – warm spices like cinnamon and nutmeg mingling with the sweet, earthy scent of pumpkin. It was pure magic, and it instantly meant fall had truly arrived. The taste? Imagine sinking your teeth into a muffin that’s incredibly moist, bursting with pumpkin spice flavor, and just the right amount of sweetness. That’s exactly what these Panera-inspired pumpkin muffins are all about!
If you’ve ever craved that iconic Panera pumpkin muffin but wanted to enjoy it fresh from your own oven, you’re in for a treat. This recipe is not only incredibly easy to follow, but it also delivers that bakery-style taste and texture you adore. Forget those dry, crumbly muffins – these are unbelievably moist, thanks to a few secret ingredients and techniques I’m going to share with you. Plus, making them at home is so much more budget-friendly and rewarding!
These muffins are perfect for a cozy weekend brunch, a delightful afternoon snack with a cup of coffee, or even a thoughtful homemade gift. The warm spices and sweet pumpkin flavor are simply irresistible, and trust me, your kitchen will smell absolutely divine while they bake. Ready to fill your home with the cozy aroma of fall and bake up the most delicious pumpkin muffins you’ve ever tasted? Let’s dive in!
Panera Pumpkin Muffin Recipe Ingredients

Full Ingredient List
- For the Muffins:
- 1 ½ cups all-purpose flour
- 1 teaspoon baking soda
- ½ teaspoon baking powder
- 1 teaspoon ground cinnamon
- ½ teaspoon ground nutmeg
- ¼ teaspoon ground cloves
- ¼ teaspoon ground ginger
- ½ teaspoon salt
- 1 cup granulated sugar
- ½ cup packed light brown sugar
- ½ cup vegetable oil
- 2 large eggs
- 1 teaspoon vanilla extract
- 1 cup pumpkin puree (not pumpkin pie filling)
- For the Streusel Topping:
- ½ cup all-purpose flour
- ⅓ cup packed light brown sugar
- ¼ cup cold unsalted butter, cut into small cubes
- ½ teaspoon ground cinnamon
- ¼ cup chopped pecans or walnuts (optional)
- For the Cream Cheese Frosting (Optional but Highly Recommended!):
- 4 ounces cream cheese, softened
- ¼ cup unsalted butter, softened
- 2 cups powdered sugar
- 1 teaspoon vanilla extract
- 2-3 tablespoons milk or heavy cream, if needed
Easy Ingredient Swaps & Simple Substitutions
Life in the kitchen is all about flexibility, right? Here are a few simple swaps you can make based on what you have on hand or your dietary needs:
- Gluten-Free: Easily make these muffins gluten-free by using a good quality gluten-free all-purpose flour blend. Make sure it’s a blend that includes xanthan gum or add about ½ teaspoon of xanthan gum yourself for better texture.
- Dairy-Free: For dairy-free muffins, you can substitute the butter in the streusel topping and frosting with a vegan butter alternative. For the cream cheese frosting, use a plant-based cream cheese. They work surprisingly well!
- Nut-Free: If you have nut allergies, simply omit the pecans or walnuts from the streusel topping. The streusel is still delicious without them!
- Spice it Up: Don’t have ground cloves or ginger? No problem! You can increase the cinnamon and nutmeg slightly or use pumpkin pie spice blend as a substitute for all the spices.
- Sweetness Adjustment: If you prefer less sweet muffins, reduce the granulated sugar to ¾ cup and the brown sugar to ⅓ cup. They’ll still be wonderfully flavorful.
Smart Shopping & Savvy Savings Tips
Baking these delightful muffins doesn’t have to break the bank! Here are a few tips to keep your grocery bill in check:
- Seasonal Spices: Stock up on cinnamon, nutmeg, cloves, and ginger during the fall baking season. They often go on sale, and you’ll use them in so many fall recipes!
- Pumpkin Puree Power: Canned pumpkin puree is usually cheaper than fresh pumpkin and just as convenient. Keep an eye out for sales, especially around Thanksgiving and Halloween.
- Brown Sugar Savings: Did you know you can make your own brown sugar? Just mix granulated sugar with molasses! For light brown sugar, use about 1 tablespoon of molasses per cup of granulated sugar.
- Pantry Staples: Most of the other ingredients like flour, sugar, oil, and eggs are pantry staples. Buying in bulk when they’re on sale is always a smart move.
- Storage Tip for Spices: To keep your spices fresh and potent, store them in airtight containers in a cool, dark place away from direct sunlight and heat.
The Essential Equipment for This Recipe
Let’s gather our tools! You’ll need some basic baking equipment for this recipe. Here’s the list:
- 12-cup Muffin Tin: Essential for baking the muffins in perfect portions. If you don’t have a 12-cup tin, you can use two 6-cup tins or bake in batches.
- Mixing Bowls (2-3): You’ll need bowls for mixing the dry ingredients, wet ingredients, and streusel topping separately. Stainless steel bowls are great for even mixing.
- Measuring Cups and Spoons: Accurate measurements are key in baking! Use dry measuring cups for flour and sugar, and liquid measuring cups for oil and pumpkin puree.
- Whisk: For combining the dry ingredients. A whisk helps to aerate the flour and prevent lumps.
- Spatula or Wooden Spoon: For mixing the wet and dry ingredients together. A spatula is perfect for scraping the bowl clean and ensuring everything is well combined.
- Electric Mixer (Hand or Stand Mixer): Optional, but highly recommended for making the cream cheese frosting light and fluffy. You can also make the frosting by hand with a whisk or sturdy spoon, it will just take a bit more elbow grease!
- Cooling Rack: Crucial for cooling the muffins properly after baking. This prevents the bottoms from getting soggy and helps them cool evenly.
- Piping Bag or Ziploc Bag (for frosting): Optional, but makes frosting the muffins neatly much easier. A Ziploc bag with a corner snipped off works perfectly as a makeshift piping bag!
How to Make Panera Pumpkin Muffins: Step-by-Step Instructions

Baking Panera Pumpkin Muffins is easy with these step-by-step visuals!
- Get Started: Preheat your oven to 375°F (190°C). Line a 12-cup muffin tin with paper liners or grease it well. This prevents sticking and makes cleanup a breeze! Prep time: 15 minutes.
- Combine Dry Ingredients: In a large mixing bowl, whisk together the flour, baking soda, baking powder, cinnamon, nutmeg, cloves, ginger, and salt. Whisking ensures even distribution of the spices and leavening agents.
- Combine Wet Ingredients: In a separate large mixing bowl, whisk together the granulated sugar, brown sugar, and vegetable oil until well combined. Then, whisk in the eggs one at a time, followed by the vanilla extract and pumpkin puree. Make sure everything is smooth and incorporated.
- Combine Wet and Dry: Gradually add the dry ingredients to the wet ingredients, mixing until just combined. Be careful not to overmix! Overmixing can lead to tough muffins. Mix until the flour streaks disappear.
- Prepare Streusel Topping: In a small bowl, combine the flour, brown sugar, and cinnamon for the streusel. Cut in the cold butter using a pastry blender or your fingers until the mixture resembles coarse crumbs. Stir in the chopped pecans or walnuts, if using. Insider Hack: For extra flavor, lightly toast the pecans or walnuts before chopping!
- Fill Muffin Cups & Add Streusel: Divide the muffin batter evenly among the prepared muffin cups, filling each about ¾ full. Sprinkle the streusel topping generously over each muffin.
- Bake to Golden Perfection: Bake in the preheated oven for 20-25 minutes, or until a toothpick inserted into the center of a muffin comes out clean. The tops should be golden brown and the streusel nicely toasted. Cook time: 20-25 minutes.
- Cool Completely: Let the muffins cool in the muffin tin for a few minutes before transferring them to a wire cooling rack to cool completely. This is crucial for preventing soggy bottoms and ensuring even cooling.
- Make Cream Cheese Frosting (Optional): While the muffins are cooling, make the frosting. In a large bowl, beat the softened cream cheese and butter with an electric mixer until smooth and creamy. Gradually add the powdered sugar, beating on low speed until incorporated, then increase speed and beat until light and fluffy. Add vanilla extract and milk or cream, one tablespoon at a time, until you reach your desired frosting consistency.
- Frost & Enjoy! Once the muffins are completely cool, frost them with the cream cheese frosting using a knife, spatula, or piping bag. Or, for a simpler touch, just dust them with powdered sugar. Serve and enjoy these warm, spiced delights! Total time: Approximately 1 hour (including prep, bake, and cooling).
Expert Insights: Tips, Tricks, and Culinary Hacks for Success

Master the art of pumpkin muffin baking with these pro tips!
Want to make sure your pumpkin muffins are absolutely perfect? Here are a few of my tried-and-true tips:
- Don’t Overmix the Batter: This is the golden rule for tender muffins! Overmixing develops the gluten in the flour, resulting in tough, dense muffins. Mix just until the wet and dry ingredients are combined and no streaks of flour remain. A few lumps are okay!
- Room Temperature Ingredients Matter: Using room temperature eggs and cream cheese (for the frosting) helps them incorporate smoothly into the batter and frosting, resulting in a better texture.
- Cooling Rack is Your Best Friend: Always cool muffins on a wire rack. This allows air to circulate underneath, preventing condensation and soggy bottoms.
- Streusel Secrets: For an extra buttery and crumbly streusel, make sure your butter is very cold and cut it into small cubes. Work it into the dry ingredients quickly to keep it cold. You can even chill the streusel in the fridge for 10-15 minutes before sprinkling it on the muffins for even better texture. Did you know? Chilling the streusel butter helps prevent it from melting too quickly in the oven, resulting in a crispier topping!
- Frosting Finesse: For a smooth, lump-free cream cheese frosting, make sure your cream cheese and butter are softened but still slightly cool. Don’t overbeat the frosting once the powdered sugar is added, as this can make it too thin.
Recipe Swaps & Variations for Panera Pumpkin Muffins
Let’s get creative! Here are some fun and delicious ways to customize these pumpkin muffins:
- Chocolate Chip Pumpkin Muffins: Add ½ cup of chocolate chips (milk, semi-sweet, or dark) to the batter for a chocolatey twist.
- Nutty Pumpkin Muffins: Incorporate ½ cup of chopped nuts like walnuts, pecans, or even toasted hazelnuts into the batter for added texture and flavor.
- Spiced Up Muffins: Experiment with different spices! Add a pinch of cardamom, allspice, or star anise for a unique flavor profile. You can also adjust the amount of cinnamon, nutmeg, cloves, and ginger to your liking.
- Maple Glaze instead of Frosting: For a lighter option, skip the cream cheese frosting and drizzle the cooled muffins with a simple maple glaze. Whisk together powdered sugar with maple syrup and a touch of milk until smooth.
- Vegan Pumpkin Muffins: Easily veganize this recipe by using flax eggs (1 tablespoon flaxseed meal + 3 tablespoons water per egg), plant-based milk, and vegan butter. For the frosting, use vegan cream cheese and vegan butter.
- Mini Pumpkin Muffins: Bake these muffins in mini muffin tins for adorable bite-sized treats. Reduce the baking time to about 12-15 minutes.
Perfect Pairings: What to Serve with Panera Pumpkin Muffins

Enjoy Panera Pumpkin Muffins in so many delicious ways!
These pumpkin muffins are wonderful on their own, but here are some perfect pairings to elevate your experience:
- Warm Beverages: A hot cup of coffee, tea, or a spiced latte is the quintessential pairing for pumpkin muffins. Apple cider or hot chocolate are also fantastic fall choices.
- Yogurt & Fruit: For a light and balanced breakfast or brunch, serve these muffins with a side of Greek yogurt and fresh fruit like berries or sliced apples.
- Whipped Cream or Ice Cream: For a more decadent dessert, top warm pumpkin muffins with a dollop of freshly whipped cream or a scoop of vanilla ice cream.
- Savory Brunch Spread: Incorporate these muffins into a brunch spread alongside savory items like scrambled eggs, bacon or sausage, and a fruit salad for a delightful mix of sweet and savory.
- Holiday Dessert Table: These pumpkin muffins are a crowd-pleasing addition to any holiday dessert table, especially for Thanksgiving or Christmas.
Storing Your Panera Pumpkin Muffins
Want to keep these muffins fresh and delicious for as long as possible? Here’s how:
- Room Temperature Storage: Store unfrosted pumpkin muffins in an airtight container at room temperature for up to 3-4 days. For frosted muffins, store them in an airtight container in the refrigerator for up to 5 days.
- Refrigerator Storage: For longer storage, especially for frosted muffins, keep them in an airtight container in the refrigerator. Let them come to room temperature or warm them slightly before serving for the best texture.
- Freezer-Friendly: Pumpkin muffins freeze beautifully! Wrap individual muffins tightly in plastic wrap, then place them in a freezer-safe bag or container. Freeze for up to 2-3 months. Thaw at room temperature or in the refrigerator before enjoying.
- Reheating Tips: To reheat muffins, you can microwave them for 15-20 seconds, or warm them in a 350°F (175°C) oven for 5-7 minutes until heated through.
- Leftover Streusel Hack: If you have leftover streusel topping (though that’s rare in my kitchen!), store it in an airtight container at room temperature. Sprinkle it over yogurt, oatmeal, or even ice cream for extra flavor and crunch!
- Food Safety Pointer: Always ensure muffins are completely cooled before storing them in airtight containers to prevent condensation and mold growth.
Printable Recipe Card

Panera Pumpkin Muffin Recipe
Equipment
- 1 Muffin Tin 12-cup
- 3 Mixing Bowls Large
- 1 Measuring Cups and Spoons Set
- 1 Whisk
- 1 Spatula or Wooden Spoon
- 1 Electric Mixer Hand or Stand Mixer (for frosting, optional)
- 1 Cooling Rack
- 1 Piping Bag or Ziploc Bag Optional, for frosting
Ingredients
Muffins
- 1 ½ cups All-purpose flour
- 1 teaspoon Baking soda
- ½ teaspoon Baking powder
- 1 teaspoon Ground cinnamon
- ½ teaspoon Ground nutmeg
- ¼ teaspoon Ground cloves
- ¼ teaspoon Ground ginger
- ½ teaspoon Salt
- 1 cup Granulated sugar
- ½ cup Packed light brown sugar
- ½ cup Vegetable oil
- 2 large Eggs
- 1 teaspoon Vanilla extract
- 1 cup Pumpkin puree not pumpkin pie filling
Streusel Topping
- ½ cup All-purpose flour
- ⅓ cup Packed light brown sugar
- ¼ cup Cold unsalted butter cut into small cubes
- ½ teaspoon Ground cinnamon
- ¼ cup Chopped pecans or walnuts optional
Cream Cheese Frosting (Optional)
- 4 ounces Cream cheese softened
- ¼ cup Unsalted butter softened
- 2 cups Powdered sugar
- 1 teaspoon Vanilla extract
- 2-3 tablespoons Milk or heavy cream if needed
Instructions
- Preheat your oven to 375°F (190°C). Line a 12-cup muffin tin with paper liners or grease it well. This prevents sticking and makes cleanup a breeze! Prep time: 15 minutes.
- In a large mixing bowl, whisk together the flour, baking soda, baking powder, cinnamon, nutmeg, cloves, ginger, and salt. Whisking ensures even distribution of the spices and leavening agents.
- In a separate large mixing bowl, whisk together the granulated sugar, brown sugar, and vegetable oil until well combined. Then, whisk in the eggs one at a time, followed by the vanilla extract and pumpkin puree. Make sure everything is smooth and incorporated.
- Gradually add the dry ingredients to the wet ingredients, mixing until just combined. Be careful not to overmix! Overmixing can lead to tough muffins. Mix until the flour streaks disappear.
- In a small bowl, combine the flour, brown sugar, and cinnamon for the streusel. Cut in the cold butter using a pastry blender or your fingers until the mixture resembles coarse crumbs. Stir in the chopped pecans or walnuts, if using. Insider Hack: For extra flavor, lightly toast the pecans or walnuts before chopping!
- Divide the muffin batter evenly among the prepared muffin cups, filling each about ¾ full. Sprinkle the streusel topping generously over each muffin.
- Bake in the preheated oven for 20-25 minutes, or until a toothpick inserted into the center of a muffin comes out clean. The tops should be golden brown and the streusel nicely toasted. Cook time: 20-25 minutes.
- Let the muffins cool in the muffin tin for a few minutes before transferring them to a wire cooling rack to cool completely. This is crucial for preventing soggy bottoms and ensuring even cooling.
- While the muffins are cooling, make the frosting. In a large bowl, beat the softened cream cheese and butter with an electric mixer until smooth and creamy. Gradually add the powdered sugar, beating on low speed until incorporated, then increase speed and beat until light and fluffy. Add vanilla extract and milk or cream, one tablespoon at a time, until you reach your desired frosting consistency.
- Once the muffins are completely cool, frost them with the cream cheese frosting using a knife, spatula, or piping bag. Or, for a simpler touch, just dust them with powdered sugar. Serve and enjoy these warm, spiced delights! Total time: Approximately 1 hour (including prep, bake, and cooling).
Notes
Nutrition Breakdown: Calories, Protein, Fats & More (per muffin, estimate without frosting)
- Calories: Approximately 280
- Protein: 4g
- Fat: 14g
- Saturated Fat: 2g
- Carbohydrates: 38g
- Sugar: 20g
- Sodium: 250mg
Disclaimer: Nutritional information is an estimate and may vary based on specific ingredients and serving sizes. For the most accurate nutritional information, use a nutrition calculator with your exact ingredients.
Recipe FAQ

Experience the perfect texture of these Panera Pumpkin Muffins!
- Can I use pumpkin pie filling instead of pumpkin puree? No, pumpkin pie filling is sweetened and spiced, which will alter the recipe’s flavor and sweetness. Make sure to use 100% pure pumpkin puree.
- How do I know when the muffins are done? Insert a toothpick into the center of a muffin. If it comes out clean or with a few moist crumbs attached (but no wet batter), the muffins are done.
- My muffins are dry, what did I do wrong? Overbaking is the most common cause of dry muffins. Also, overmixing the batter can contribute to dryness. Make sure to bake until just done and mix the batter only until combined.
- Can I make these muffins ahead of time? Absolutely! Pumpkin muffins are great for making ahead. They stay moist for several days. Store them as instructed above.
- What if I don’t have brown sugar? You can substitute with granulated sugar, but brown sugar adds a lovely molasses flavor and moisture. If you must substitute, consider adding a teaspoon of molasses to the batter along with granulated sugar.
- Can I freeze the frosted muffins? Yes, you can freeze frosted muffins. Freeze them in a single layer on a baking sheet until solid, then wrap individually and store in a freezer-safe container. This prevents the frosting from getting smushed.
Happy Cooking & Share Your Results!

Treat yourself to a warm and comforting Panera Pumpkin Muffin today!
There you have it – my treasured Panera pumpkin muffin recipe, ready for you to bake and enjoy! I truly believe these are the best homemade pumpkin muffins you’ll ever make. They’re bursting with warm spices, incredibly moist, and that streusel topping? Oh my goodness, it’s the perfect crunchy-sweet finish. And that optional cream cheese frosting just takes them completely over the top!
I can’t wait for you to try this recipe and fill your kitchen with the cozy aroma of fall baking. Once you do, please, please tell me all about it! Leave a comment below and let me know how your muffins turned out. Did you add any fun variations? What did you serve them with? And most importantly, did you love them as much as I do?
Don’t forget to snap a picture of your beautiful pumpkin muffins and share them on social media! Tag me on Instagram and Pinterest so I can see your amazing creations. Happy Baking, my friend!